Researchers Explore Epigenetic Influences of Chronic Pain

    Chronic pain is one of the most prevalent, disabling and expensive public health crises in the United States.  It affects more than 100 million Americans, with annual costs estimated at $635 billion, says a 2014 report from the American Pain Society.

    Despite the huge societal impact of chronic pain, present treatment options are limited to nonsteroidal anti-inflammatory drugs, opioids, anticonvulsants, and antidepressants, which provide pain relief to only about half of patients. Furthering the problem, prescription opioid overdoses have quadrupled since 1999.

    Now, researchers at Drexel University College of Medicine are aiming to identify new molecular mechanisms involved in pain. Their latest study (“Genome-Wide Redistribution of MeCP2 in Dorsal Root Ganglia after Peripheral Nerve Injury”), published in Epigenetics & Chromatin, shows how one protein—acting as a master controller—can regulate the expression of a large number of genes that modulate pain.

    “The hope is that understanding this pathway would lead to the identification of genes that we can target with drugs as nonaddictive options for treating chronic pain,” said Melissa Manners, Ph.D., lead author of the study under the supervision of principal investigator Seena Ajit, Ph.D., an assistant professor in the College of Medicine.

    In their effort to identify new drug targets, the research team explored how gene expression can be regulated by factors other than genetics. One protein with a critical role in mediating epigenetic changes is methyl-CpG-binding protein 2 (MeCP2), which can regulate the expression of a large number of genes by binding to DNA. Mutations in this DNA-binding protein cause Rett syndrome, an autism spectrum disorder that predominantly affects girls.

    Rett patients have a number of severe impairments that can hinder a child’s ability to speak, walk, eat, and breathe. However, a puzzling effect of this genetic mutation is the patient’s higher threshold for pain, suggesting that the functional MeCP2 protein has a role in controlling pain perception.

    The researchers hypothesized that nerve injury can induce differences in the binding pattern of MeCP2, which, in turn, can lead to changes in the expression of a large number of downstream genes that could ultimately cause pain. Dr. Ajit and her team performed their study in dorsal root ganglia (DRG), a cluster of nerve cell bodies at the root of a spinal nerve.The researchers found that MeCP2 levels are increased after nerve injury.

    “But we didn’t know which genes are regulated by the protein and wanted to pursue an approach that has not been explored previously,” Dr. Ajit said. “It was a technically challenging study to perform, because of the small size of the DRG.”

    To investigate the genes regulated by MeCP2 under a chronic neuropathic pain state, the research team performed a global study to identify the DNA-binding pattern in the DRG. They wanted to identify the DNA sequences in the mouse genome specifically bound by MeCP2 protein and the changes in the regions bound by MeCP2 after nerve injury.

    After nerve injury, the binding pattern of MeCP2 shifted more toward regions of the DNA that code for proteins and small non-protein-coding regulatory RNA molecules.

    These results, combined with findings from the group’s previous studies, show that MeCP2 broadly binds to chromatin and can therefore influence the expression of numerous target genes in the peripheral nervous system. The discovery provides the molecular basis for a better understanding of how MeCP2 can simultaneously regulate multiple genes involved in the pain pathway.

    “It is difficult to alter the function of MecP2 with a drug because of its broad expression and role,” noted Dr. Ajit. “Now that we have a molecular basis to link MeCP2 to nerve injury-induced neuropathic pain, we plan to further explore the targets of MeCP2 and understand how they regulate pain.”