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Beautiful Chemistry Issue 5: Antibody-drug conjugates based on Cysteine Coupling

Antibody-drug conjugates based on Cysteine Coupling
Antibody-drug conjugates based on Cysteine Coupling
Antibody−drug conjugates (ADCs) have attracted great attention in recent years in the wake of an accelerated FDA approval rate and several large-scale acquisitions. To date, about 15 ADC drugs have been approved by FDA for various cancer treatments (Table 1) and more than 70 candidate drugs are in different stages of clinical trials.
An antibody−drug conjugate is a complex molecule composed of biologically active small molecule linked to an antibody (mAb) through a cleavable or non-cleavable linker. Usually, the amino group on the lysine side chain and the sulfhydryl group on the cysteine residue in antibody provide conjugation sites.   However, there are roughly 80 lysine residues in the antibody to provide potential conjugation sites, thus a large number of heterogeneous products will be formed. In contrast, the low abundance of cysteine residues confers high level of site-specificity for the conjugation.
The cysteine-based conjugation of the linker-payload to an antibody relies on the reaction between a reduced sulfhydryl group in the antibody and a thiol-specific electrophile in the linker-payload such as maleimide.  For example, the 4 pairs of interchain disulfides in IgG1/4 antibodies are much exposed and can be easier reduced by reducing agents such as TCEP/DTT, than the buried intrachain disulfides used to maintain the structure of an IgG antibody.  So under suitable reducing conditions, the appropriate disulfide bonds on IgG1 antibody are opened and conjugated with linker-payload, and a coupling product with an antibody−drug ratio (DAR) of 0−8 can be obtained. Certainly, all four interchain disulfide bonds of an IgG1 antibody can be reduced and coupled to generate a homogeneous ADC with maximum DAR of 8.  However, it is reported that higher drug loading (DAR = 6 or 8) can result in decreased therapeutic efficacy owing to the higher plasma clearance rate and aggregation. Generally, the most ideal average DAR is around 4 for IgG1 antibody. On the other hand, the retro-Michael reaction renders the ADC premature loss of drug in plasma leading to drug toxicity.
Table 1. List of Antibody−Drug Conjugates Currently Approved by FDA
Table 1. List of Antibody−Drug Conjugates Currently Approved by FDA

Basically, the druggability of the cysteine-coupling-based ADCs can be improved by increasing the stability of the chemical bond and the homogeneity of the ADC after coupling. In the review from Zhang group (CPU) and WuXi Biologics1, the authors summarize the methods addressing these two aspects.

Each ADC R&D project is its own challenge due to the varieties in the assembly of ADC molecules. With this concept in mind, Medicilon promises careful planning, meticulous execution and accurate results through years of practical experience and effective communication with our clients.

Use the Appropriate Combination of Linker and Drug to Make the DAR8 Products.

Although the high-loading ADCs are easily cleared in the body, it is relatively easy to obtain a homogeneous ADC by opening all 4 of disulfide bonds and connecting 8 drugs. Enhertu (Figure 1) and Trodelvy (Figure 2), which are currently on the market, have the DAR near 8. Enhertu uses a tetrapeptide linker (GGFG), which effectively enhances the stability of the ADC in the case of high connection numbers. At the same time, it uses an irinotecan derivative, DXd, as the drug.  DXd is about 10 times less cytotoxicity than DM1 and MMAE. Thus even if hydrolyzed off from the antibody, its general toxicity is limited. Furthermore, DXd’s lactone can be quickly hydrolyzed by esterases in the body, rendering its nontoxic to metabolites.  Trodelvy also uses the less toxic SN38 as the drug payload.  The relatively complicated hydrophilic structure of the linker (CL2A) makes the coupling reaction with high DAR easier.
Based on the successful cases of Enhertu and Trodelvy, the strategy of adopting high DAR to improve the homogeneity of ADC requires at least the consideration of the following points:
1) a reasonable linker design, so that the antibody can bind to the antigen and its pharmacokinetics property is acceptable;
2) an appropriate combination of drug and linker to ensure that the antibody will not easily aggregate during and after the coupling reaction;
3) selection of relatively low toxic drug whose premature release in plasma does less systematic harm.
Figure 1. Enhertu
Figure 1. Enhertu
Figure 2. Trodelvy
Figure 2. Trodelvy

Optimize the Coupling Process to Improve the Homogeneity of ADC Products.

The DAR of Adcetris has a 0, 2, 4, 6, and 8 distribution by hydrophobic interaction chromatography (HIC-HPLC) analysis, although the average DAR is around 4.1 (Figure 3).  Such heterogeneous DAR brings certain difficulties to the quality control, also studies have shown four drugs per antibody have the strongest combined effect.  Therefore methods to increase the percentage of DAR4 species in an ADC are actively sought.  For example, DS-1062, a DXd-conjugated ADC targeting Trop2 protein, during the conjugation process, the reduction temperature was reduced to around 0°C and the reduction time was extended; the proportion of the DAR4 product has increased from 37.7% to 53.3% as compared to room temperature reduction. Compared with the physical cooling method, WuXi Biologics uses zinc ions to form chemical coordination bonds with the sulfhydryl groups in the hinge area of antibody.  This shielding effect makes only the reduced sulfhydryl in the Fab region accept toxin drugs.  This method increases the proportion of DAR4 components in ADCs from 38.4% to 70.4%, and almost all small molecule toxins are coupled to the Fab area (Figure 4).

Figure 3: DAR distributions of Adcetris
Figure 3: DAR distributions of Adcetris
Figure 4: HIC-HPLC of WuXi DAR4 platform
Figure 4: HIC-HPLC of WuXi DAR4 platform

Improve the Homogeneity of ADC Products through Antibody Engineering.

Antibody engineering technology provides another way to produce homogeneous site-specific ADCs. The first systematic study was initiated by Junutula and co-workers at Genentech (Figure 5). These site-specific ADCs, called THIOMAB antibody−drug conjugates (TDCs), were produced by the introduction of a “hot” cysteine residue, followed by a global reduction of “hot” cysteine and interchain disulfides and subsequent oxidation in the presence of CuSO4 to regenerate interchain disulfides. The TDCs exhibited improved in vivo efficacy in a mouse xenograft model of ovarian cancer. Importantly, TDCs have improved therapeutic index, higher dose tolerance and increased serum stability in rats and monkeys.  However, the THIOMAB technology still faces some challenges in its implementation.  

1) The selection of the introduced cysteine site needs to be carefully considered. The mutation sites may directly affect the properties of the ADC.
2) The introduction of cysteine mutations in antibodies may cause misfolding and disulfide bond mismatching during antibody re-formation.  The expression of antibodies with cysteine mutations has been a relatively big challenge.
Figure 5. Conjugation of cytotoxic drugs to engineered THIOMABs
Figure 5. Conjugation of cytotoxic drugs to engineered THIOMABs

Accelerate the Hydrolysis of succinimide after thioether Bond Formation.

Currently, cysteine−maleimide coupling methods are used for most of approved ADCs. However, in PBS buffer and plasma stability tests, it was found that the conjugate could undergo a retro-Michael reaction, causing the toxins to fall off from the antibody and increasing toxic side effects.  Studies have demonstrated that opening the succinimide ring by hydrolysis after coupling can produce a derivative that is resistant to the elimination reaction and improve the stability of ADC.  In addition, the substituents on the adjacent sites of maleimide greatly affect the hydrolysis rate of succinimide ring after conjugation.  For example, the introduction of −CH2−NH2 at this site can greatly accelerate the hydrolysis of the five-membered lactam ring thus improve the stability of ADC product (Figure 6).

Figure 6. Self-hydrolyzing maleimides improve the stability
Figure 6. Self-hydrolyzing maleimides improve the stability

Use Other Functional Groups for Coupling with Cysteine.

Since the retro-Michael reaction is the main factor for the instability of the cysteine−maleimide ADCs. Therefore, alternative functional groups reacting with cysteine that are not prone to reverse Michael reaction will greatly improve the stability of ADCs.  As disclosed in US2021101906A2, 2-methylsulfonyl pyrimidine provides a possible option.  By using this structure as the reactive functional group on the linker, the ADC product SKB264 (Figure 7) was produced by SnAr substitution to the thioether bond. Such ADC has better stability and efficacy than the approved maleimide linked ADC Trodelvy.

Figure 7. Linker-payload of SKB264
Figure 7. Linker-payload of SKB264

Re-bridging the Opened Disulfide Bonds.

The thiobridge technology uses the reduced disulfide pair to attach (bridge) one drug molecule to overcome the thio-exchange instability. Uniform DAR4 product can be obtained if all 4 interchain disulfide bonds are reduced and reacted with the linker−drug.  The key to re-bridging is that the linker needs to have a functional group that can react with the sulfhydryl group twice, and with similar reactivity, otherwise instead of forming the bridge, each sulfhydryl will still react with the more reactive group on the linker and two drugs will be attached to the opened disulfide pair.  In 1990, the Smith and Lawton group reported the use of bis-sulfone for specific modification of antibodies (Figure 8a).  Bis-sulfone requires activation, by eliminating a sulfinate to yield the active mono-sulfone species that reacts with one of the free thiols generated by disulfide reduction.  A second Michael acceptor is generated by elimination of the other sulfinate, and the remaining thiol then undergoes the second Michael addition to yield the bis-thioether with a three-carbon linkage. Other moieties, such as dibromomaleimide and dibromo-pyridazinedione, also allow bridged drug formation at the interchain disulfide region.  All these linkers can quickly react with the sulfhydryl group twice to obtain an ADC with DAR4 and enhanced stability in plasma (Figure 8b).  Furthermore, different derivatizations of the substituted pyridazinedione linker can also allow the introduction of different drugs on one linker.  C-Lock technology provides another strategy for re-bridging. It introduces a dialkylated bromomethyl functional group on a heterocyclic nucleus to form a stable thioether structure with four carbons bridge backbone after conjugation (Figure 8c). In 2019, Walsh et al. reported a new type of bis-Michael acceptor, divinylpyrimidine (Figure 8d), it also offered the re-bridging product in good yields.

8a. Two cysteines are re-bridged using a three-carbon bridge
8a. Two cysteines are re-bridged using a three-carbon bridge
8b. bromo- or thiophenyl-substituted maleimide
8b. bromo- or thiophenyl-substituted maleimide
8c. Divinylpyrimidine linker
8c. Divinylpyrimidine linker
8c. C-lock
8c. C-lock

Despite extensive studies on thiobridge technology to facilitate the site-specific functionalization of interchain disulfides in native antibodies, certain pitfalls and limitations still exist.  

1) Disulfide scrambling is unavoidable, affecting product efficacy, yield, and scalability.

2) The re-bridging reagents cannot distinguish between reduced disulfides and free thiols under reducing condition, limiting the use of disulfide re-bridging to a subset of antibodies lacking free cysteines.

3) Re-bridging reagents exhibit poor water solubility and usually require cosolvent to carry out the reaction. This increases the chance of denaturing the antibody. 

In conclusion, the cysteine-based conjugation occupies a dominant position in both approved and clinically developed ADCs.  The choice of conjugation method plays the key role in the synthesis of such ADCs and directly affects the success of ADC.  Although various methods are developed to improve the stability and the homogeneity of the ADC, it still has much areas to further improve such conjugation. 

Medicilon’s ADC team can offer all the payloads and linkers used in approved ADCs.  We are eager to use our expertise, to help our client on the area of developing new linker-payloads to improve the properties of ADCs. 

References:

[1]. Cysteine-Based Coupling: Challenges and Solutions., Jianwei You, Juan Zhang, Jun Wang, and Mingzhi Jin., Bioconjugate Chemistry., 2021, 32 (8), 1525-1534. DOI: 10.1021/acs.bioconjchem.1c00213.
[2]. Precision Modification of Native Antibodies., Kuan-Lin Wu, Chenfei Yu, Catherine Lee, Chao Zuo, Zachary T. Ball, and Han Xiao., Bioconjugate Chemistry., 2021, 32 (9), 1947-1959. DOI: 10.1021/acs.bioconjchem.1c00342.[3]. Bioactive Conjugate, Preparation Method Therefor And Use Thereof., Cai Jiaqiang et.al. US2021101906A2.
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